Modeling protein–ligand interactions for drug discovery in the era of deep learning

Y.X. Wang, Yibo Li, Jiaxiao Chen, Luhua Lai · Chemical Society Reviews · 2025

drug design with deep generative models, and (5) sequence-based methods for interaction prediction and drug discovery. In this review, we provide a focused overview of these advances, highlight emerging strategies for their integration, examine ongoing challenges, and outline future directions. We argue that bridging physics-based and data-driven approaches not only improves predictive power and efficiency, but also enables exploration of the vast chemical and biological spaces central to modern drug discovery.

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