Going beyond SMILES enumeration for data augmentation in generative drug discovery

Helena Brinkmann, Antoine Argante, Hugo ter Steege, Francesca Grisoni · Digital Discovery · 2025

systematic analysis, our results showed the promise of considering additional strategies for SMILES augmentation. Every strategy showed distinct advantages; for example, atom masking is particularly promising to learn desirable physico-chemical properties in very low-data regimes, and deletion to create novel scaffolds. This new repertoire of SMILES augmentation strategies expands the available toolkit to design molecules with bespoke properties in low-data scenarios.

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