GAFExplainer: Global View Explanation of Graph Neural Networks Through Attribute Augmentation and Fusion Embedding
Wenya Hu, Jia Xin Wu, Quan Qian · IEEE Transactions on Knowledge and Data Engineering · 2025
The excellent performance of graph neural networks (GNNs), which learn node representations by aggregating their neighborhood information, led to their use in various graph tasks. However, GNNs are black box models, the prediction results of which are difficult to understand directly. Although node attributes are vital for making predictions, previous studies have ignored their importance for explanation. This study presents GAFExplainer, a novel GNN explainer that emphasizes node attributes via attribute augmentation and fusion embedding. The former enhances node attribute encoding for more expressive masks, while the latter preserves the discrimination of node representations across different layers. Together, these modules significantly improve explanation performance. By training the explanatory network, a global view explanation of GNN models is obtained, and reasonably explainable subgraphs are available for new graphs, thus rendering the model well-generalizable. Multiple sets of experimental results on real and synthetic datasets demonstrate that the proposed model provides valid and accurate explanations. In the visual analysis, the explanations obtained by the proposed model are more comprehensible than those in existing work. Further, the fidelity evaluation and efficiency comparison reveal that with an average performance improvement of 8.9$\% $compared with representative baselines, GAFExplainer achieves the best fidelity metrics while maintaining computational efficiency.