Molecular similarity: Theory, applications, and perspectives
Kenneth López‐Pérez, Juan F. Avellaneda-Tamayo, Lexin Chen, Edgar López‐López, K. Eurídice Juárez‐Mercado, José L. Medina‐Franco, Ramón Alain Miranda‐Quintana · Artificial Intelligence Chemistry · 2024
Molecular similarity pervades much of our understanding and rationalization of chemistry. This has become particularly evident in the current data-intensive era of chemical research, with similarity measures serving as the backbone of many Machine Learning (ML) supervised and unsupervised procedures. Here, we present a discussion on the role of molecular similarity in drug design, chemical space exploration, chemical "art" generation, molecular representations, and many more. We also discuss more recent topics in molecular similarity, like the ability to efficiently compare large molecular libraries.