Cryptocarpus_Sea analyses
Yurena Arjona, Javier Fernández López, Miguel Navascués, Nadir Álvarez, Manuel Nogales, Pablo Vargas · Figshare · 2020
Dataset and scripts used in the paper "In the realm between landscape and seascape genetics: oceanic currents favour active colonization of a coastal plant (Cryptocarpus pyriformis) across the Galápagos Islands" Dataset (.vcf): Cryptocarpus pyriformis SNPs obtained by ddRADseq and processed with ipyrad with clustering threshold 0.93 and minimum depth of 10. Postrior filtering removing all loci with >70% missing data was performed using vcftools. The file "one-snpxlocus.vcf" is a subset of "Cp_CONT-GAL_ipyradc93d10-filt30.vcf" only with Galápagos samples and with one SNP per locus. Scripts: "sea_currents_analysis.R": reciprocal causal modelling and redundancy analysis."functions_sea.R": functions used in the previous script.