example C++ code used to parse and analyse the vcf files from Signals interpreted as archaic introgression appear to be driven primarily by faster evolution in Africa
William Amos · Figshare · 2020
Annotated C++ code used to calculate conditioned D using individual chromosome vcf files from the 1000 genomes project and equivalent files containing base counts from each site in the Neanderthal and Denisovan genomes.