Nomer Corpus of Taxonomic Resources hash://sha256/e4dd19f14143b87497c126aa337a607838ea3766c70afb3a9ffcd978e7a9f7f3 hash://md5/71335ed219afb0a5ad7c671f003f834d
Jorrit H. Poelen · Zenodo (CERN European Organization for Nuclear Research) · 2023
This publication contains a Preston archive of resources used by Nomer, a biodiversity name and term translator. This archive contains specific (repackaged) versions of: NCBI Taxonomy [1,2], ITIS Taxonomy [3], GBIF Backbone Taxonomy [4,5], Index Fungorum [6], Plazi Treatment Bank [7], the Catalogue of Life [8], the Open Tree of Life Reference Taxonomy [9], the World of Flora Online [10], the Foundational Taxonomic Resources For The Terrestrial Parasite Tracker (TPT) Project [11], Paleobiology Database [12], Mammal Diversity Database [13], and Discover Life bee species guide and world checklist [14]. Please follow academic citation guidelines when using this corpus. To clone this archive: preston clone --anchor hash://sha256/e4dd19f14143b87497c126aa337a607838ea3766c70afb3a9ffcd978e7a9f7f3 --remote https://linker.bio,https://zenodo.org/records/10045249/files/,https://zenodo.org/records/10037817/files/,https://zenodo.org/records/8327611/files/ https://zenodo.org/records/10044989/files/ After cloning this archive, you should be able to reproduce results below without the --remote https://zenodo.org... part. This publication has history: preston history --anchor hash://sha256/e4dd19f14143b87497c126aa337a607838ea3766c70afb3a9ffcd978e7a9f7f3 --remote https://linker.bio,https://zenodo.org/records/10045249/files/,https://zenodo.org/records/10037817/files/,https://zenodo.org/records/8327611/files/ producing the following provenance graph - . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . This publication contains versions for the following (internet) content aliases (aka URLs, URIs, URNs): preston alias -l tsv --anchor hash://sha256/e4dd19f14143b87497c126aa337a607838ea3766c70afb3a9ffcd978e7a9f7f3 --remote https://linker.bio,https://zenodo.org/records/10045249/files/,https://zenodo.org/records/10037817/files/,https://zenodo.org/records/8327611/files/ | cut -f1 | sort | uniq col:NameUsage.tsv col:NameUsage.tsv.gz http://104.198.143.165/files/WFO_Backbone/_WFOCompleteBackbone/WFO_Backbone.zip https://download.catalogueoflife.org/col/latest_coldp.zip https://files.opentreeoflife.org/ott/ott3.3/ott3.3/taxonomy.tsv https://files.opentreeoflife.org/ott/ott3.4/ott3.4.tgz https://files.worldfloraonline.org/Files/WFO_Backbone/_WFOCompleteBackbone/WFO_Backbone.zip https://ftp.ncbi.nlm.nih.gov/pub/pmc/PMC-ids.csv.gz https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump.tar.gz https://github.com/bio-guoda/preston/releases/download/0.3.9/preston.jar https://github.com/bio-guoda/preston/releases/download/0.4.4/preston.jar https://github.com/globalbioticinteractions/globi-taxon-names/raw/main/non-taxon-words.txt https://github.com/globalbioticinteractions/globi-taxon-names/raw/main/taxon-name-mapping.csv https://github.com/globalbioticinteractions/nomer/releases/download/0.2.5/nomer.jar https://github.com/mammaldiversity/mammaldiversity.github.io/raw/master/_data/mdd.csv https://github.com/plazi/treatments-rdf/archive/master.zip https://paleobiodb.org/data1.2/refs/list.tsv?all_records https://paleobiodb.org/data1.2/taxa/list.tsv?all_records https://query.wikidata.org/sparql?format=json&query=PREFIX%20rdfs:%20%3Chttp://www.w3.org/2000/01/rdf-schema%23%3E%0APREFIX%20bd:%20%3Chttp://www.bigdata.com/rdf%23%3E%0APREFIX%20wd:%20%3Chttp://www.wikidata.org/entity/%3E%0APREFIX%20wikibase:%20%3Chttp://wikiba.se/ontology%23%3E%0APREFIX%20wdt:%20%3Chttp://www.wikidata.org/prop/direct/%3E%0ASELECT%20?i%20?l%20WHERE%20%7B%0A%20%20?i%20wdt:P31%20wd:Q427626.%0A%20%20?i%20rdfs:label%20?l%0A%7D https://raw.githubusercontent.com/jhpoelen/zenodo-upload/master/zenodo_upload.sh https://raw.githubusercontent.com/njdowdy/tpt-taxonomy/main/Acari/Acari-standardized-v2.csv https://raw.githubusercontent.com/njdowdy/tpt-taxonomy/main/host_files/Aves-