Nomer Corpus of Taxonomic Resources hash://sha256/ed9f35887419d44ad294b4225fed0a9113ac68ca5314c4b6b009709fc1698898 hash://md5/cd316b81c3a6626cc9c9c07c8b8b3872
Jorrit H. Poelen · Zenodo (CERN European Organization for Nuclear Research) · 2023
This publication contains a Preston archive of resources used by Nomer, a biodiversity name and term translator. This archive contains specific (repackaged) versions of: NCBI Taxonomy [1,2], ITIS Taxonomy [3], GBIF Backbone Taxonomy [4,5], Index Fungorum [6], Plazi Treatment Bank [7], the Catalogue of Life [8], the Open Tree of Life Reference Taxonomy [9], the World of Flora Online [10], the Foundational Taxonomic Resources For The Terrestrial Parasite Tracker (TPT) Project [11], Paleobiology Database [12], Mammal Diversity Database [13], and Discover Life bee species guide and world checklist [14]. Please follow academic citation guidelines when using this corpus. To clone this archive: preston clone\ --anchor hash://sha256/ed9f35887419d44ad294b4225fed0a9113ac68ca5314c4b6b009709fc1698898\ https://zenodo.org/record/8290342/files/ After cloning this archive, you should be able to reproduce results below without the --remote https://zenodo.org... part. This publication has history: preston history\ --remote https://zenodo.org/record/8290342/files/\ --anchor hash://sha256/ed9f35887419d44ad294b4225fed0a9113ac68ca5314c4b6b009709fc1698898 . . . . . . . . . . . . . . . . . . . . This publication contains versions for the following internet content aliases (aka URLs): preston alias\ -l tsv\ --remote https://zenodo.org/record/8290342/files/\ | cut -f1\ | sort\ | uniq http://104.198.143.165/files/WFO_Backbone/_WFOCompleteBackbone/WFO_Backbone.zip https://download.catalogueoflife.org/col/latest_coldp.zip https://files.opentreeoflife.org/ott/ott3.3/ott3.3/taxonomy.tsv https://files.opentreeoflife.org/ott/ott3.4/ott3.4.tgz https://files.worldfloraonline.org/Files/WFO_Backbone/_WFOCompleteBackbone/WFO_Backbone.zip https://ftp.ncbi.nlm.nih.gov/pub/pmc/PMC-ids.csv.gz https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump.tar.gz https://github.com/bio-guoda/preston/releases/download/0.3.9/preston.jar https://github.com/bio-guoda/preston/releases/download/0.4.4/preston.jar https://github.com/globalbioticinteractions/globi-taxon-names/raw/main/non-taxon-words.txt https://github.com/globalbioticinteractions/globi-taxon-names/raw/main/taxon-name-mapping.csv https://github.com/globalbioticinteractions/nomer/releases/download/0.2.5/nomer.jar https://github.com/mammaldiversity/mammaldiversity.github.io/raw/master/_data/mdd.csv https://github.com/plazi/treatments-rdf/archive/master.zip https://paleobiodb.org/data1.2/refs/list.tsv?all_records https://paleobiodb.org/data1.2/taxa/list.tsv?all_records https://query.wikidata.org/sparql?format=json&query=PREFIX%20rdfs:%20%3Chttp://www.w3.org/2000/01/rdf-schema%23%3E%0APREFIX%20bd:%20%3Chttp://www.bigdata.com/rdf%23%3E%0APREFIX%20wd:%20%3Chttp://www.wikidata.org/entity/%3E%0APREFIX%20wikibase:%20%3Chttp://wikiba.se/ontology%23%3E%0APREFIX%20wdt:%20%3Chttp://www.wikidata.org/prop/direct/%3E%0ASELECT%20?i%20?l%20WHERE%20%7B%0A%20%20?i%20wdt:P31%20wd:Q427626.%0A%20%20?i%20rdfs:label%20?l%0A%7D https://raw.githubusercontent.com/jhpoelen/zenodo-upload/master/zenodo_upload.sh https://raw.githubusercontent.com/njdowdy/tpt-taxonomy/main/Acari/Acari-standardized-v2.csv https://raw.githubusercontent.com/njdowdy/tpt-taxonomy/main/host_files/Aves-standardized-v2.csv https://raw.githubusercontent.com/njdowdy/tpt-taxonomy/main/host_files/Mammalia-standardized-v2.csv https://raw.githubusercontent.com/njdowdy/tpt-taxonomy/main/Ixodida/Ixodida-standardized-v2.csv https://raw.githubusercontent.com/njdowdy/tpt-taxonomy/main/Phthiraptera/Phthiraptera-standardized-v2.csv https://raw.githubusercontent.com/njdowdy/tpt-taxonomy/main/Siphonaptera/Siphonaptera-standardized-v2.csv https://uofi.box.com/shared/static/54l3b7h4q4pwqq4fgqvx42h3d328fl1c.csv https://www.discoverlife.org/mp/20q/?act=x_checklist https://www.discoverlife.org/mp/20q/?act=x_checklist&guide=Apoidea_species&flags=HAS https://www.itis.gov/downloads/itisMSSql.zip https://www.nodc.noaa.gov/cgi-bin/OAS/prd/download/50418.1.1.tar.gz https://zenodo.org/record/3833105/files/synonym_links.gz https://zenodo.org/record/3833105/files/taxonomic_units.gz https://zenodo.org/record/3833105/files/taxon_unit_types.gz https://zenodo.org/record/3834881/files/taxon.tab.gz https://zenodo.org/record/5222044/files/gbif-backbone-by-id.tsv.gz https://zenodo.org/record/5222044/files/gbif-backbone-by-name.tsv.gz https://zenodo.org/record/5526782/files/taxonCache.tsv.gz https://zenodo.org/record/5526782/files/taxonMap.tsv.gz https://zenodo.org/record/5639794/files https://zenodo.org/record/5719410/files/taxonCache.tsv.gz https://zenodo.org/record/5719410/files/taxonMap.tsv.gz https://zenodo.org/record/6127573/files https://zenodo.org/record/6394935/files/taxonCache.tsv.gz https://zenodo.org/record/6394935/files/taxonMap.tsv.gz https://zenodo.org/record/6473194/files https://zenodo.org/record/6707049/files/gbif-backbone-by-id.tsv.gz https://zenodo.org/record/6707049/files/gbif-backbone-by-name.tsv.gz https://zenodo.org/record/7405292/files/gbif-backbone-by-id.tsv.gz https://zenodo.org/record/7405292/files/gbif-backbone-by-name.tsv.gz https://zenodo.org/record/7761832/files/taxonCache.tsv.gz https://zenodo.org/record/7761832/files/taxonMap.tsv.gz References [1] Schoch CL, et a