MERRIN: MEtabolic Regulation Rule INference from time series data (Docker image and notebooks)
Kerian Thuillier, Caroline Baroukh, Alexander Bockmayr, Ludovic Cottret, Anne Siegel, Loïc Paulevé · Zenodo (CERN European Organization for Nuclear Research) · 2021
This record contains notebooks and Docker image for reproducing the results of the paper "MERRIN: MEtabolic Regulation Rule INference from time series data" published as part of the ECCB 2022 conference. Notebooks can be executed interactively within the Docker image bioasp/merrin:v1 which extends the CoLoMoTo Docker version 2021-02-01. Also see https://github.com/bioasp/merrin-covert The Docker image can be executed as follows: docker pull bioasp/merrin:v1 docker run -it --rm -p 8888:8888 bioasp/merrin:v1 then point your browser to http://127.0.0.1:8888. The image can be imported using the command docker load with the image file provided in this record: docker load -i image.tar.gz or with the donodo command available at https://github.com/pauleve/donodo: pip install -U donodo donodo pull 10.5281/zenodo.6670165