Matrix N, TEs vs promoters, weighted with L = 1e5kb
Cyril Pulver · Zenodo (CERN European Organization for Nuclear Research) · 2022
Regulatory susceptibility matrix N, with rows as hg19 protein coding genes and columns as TE subfamilies. For any given gene, regulatory TEs are strictly out of any promoter and any exon belonging to that gene. The contribution of each single TE is weighted by a gaussian kernel centered on the closest promoter of that gene, with a bandwidth L = 1e5kb