Rye600K SNP Array 'Lo7' Map
Nikolaj Meisner Vendelbo · Zenodo (CERN European Organization for Nuclear Research) · 2021
Mapping position of rye600K SNP array markers developed by Bauer., et al. 2017, on the reference chromosomal-scale rye reference genome 'Lo7'. Shared in the hope that it provides a valuable and easily-accessible resource for further studies in rye genomics. Method: Positional data of 600K SNP markers was obtained by mapping each of the 600843 SNP marker sequences to the rye reference genome ‘Lo7’ using NCBI blastn (v. 2.9.0+) function. Mapping position of SNPs were hereafter stringently filtered for I) complete SNP sequence alignment, and II) maximum of 1 mismatch to ensure an accurate positioning.