Dataset of sequences, alignments and structural models generated for the structural prediction of complexes mediated by intrinsically disordered regions.
Hélène Bret, Jessica Andréani, Raphaël Guérois · Zenodo (CERN European Organization for Nuclear Research) · 2023
This archive contains input and ouput files used and generated for the scanning of intrinsically disordered region and the prediction of their binding sites to receptor proteins. The archive contains 3 directories and a README file detailing their contents : the initial raw sequence and alignment data for every chain -> DIRECTORY fasta_msa/ the input and output data of every Alphafold run for every complex -> DIRECTORY af2_runs/ the native reference structures -> DIRECTORY ref_capri_curated/ The protein-peptide complex cases have been assigned a distinct index number, from 1 to 42, consistent across the several directories of the archive. Their corresponding directories are labelled as _ . These data can be used to rerun specific sections of the pipeline and scripts provided in: https://github.com/i2bc/SCAN_IDR