In Silico and In Vitro Inhibition of SARS-CoV-2 PLpro with Gramicidin D
Sara Protić, Nevena Kaličanin, Milan Senćanski, Olivera Prodanović, Jelena S. Milićević, Vladimir Perović, Slobodan Paessler, Radivoje Prodanović, Sanja Glišić · International Journal of Molecular Sciences · 2023
Finding an effective drug to prevent or treat COVID-19 is of utmost importance in tcurrent pandemic. Since developing a new treatment takes a significant amount of time, drug repurposing can be an effective option for achieving a rapid response. This study used a combined in silico virtual screening protocol for candidate SARS-CoV-2 PLpro inhibitors. The Drugbank database was searched first, using the Informational Spectrum Method for Small Molecules, followed by molecular docking. Gramicidin D was selected as a peptide drug, showing the best in silico interaction profile with PLpro. After the expression and purification of PLpro, gramicidin D was screened for protease inhibition in vitro and was found to be active against PLpro. The current study’s findings are significant because it is critical to identify COVID-19 therapies that are efficient, affordable, and have a favorable safety profile.