New Extensibility Tools for Scripting in ImageJ
Niklas A. Gahm, Curtis Rueden, Evans, Edward, Gabriel J. Selzer, Mark Hiner, Jenu Varghese Chacko, Nathan M. Sherer, Kevin W. Eliceiri, Dasong Gao · Zenodo (CERN European Organization for Nuclear Research) · 2021
This is the set of sample data (here) and scripts (uw-loci/ScriptingExampleForFLIMJandOps) needed to run the protocols in the New Extensibility Tools for Scripting in ImageJ paper available at: - Add publication link once known The Protocols and the Required Files for them are: Basic Protocol 1: Using PyImageJ for FLIM Processing - BP1_PyImageJ.ipynb - read_wiscscan_sdt.py - epithelial_human_FLIM.sdt Alternate Protocol 1: Groovy FLIMJ in Jupyter Notebooks - AP1_FLIM_Notebook.ipynb - epithelial_human_FLIM.sdt Basic Protocol 2: Using ImageJ Ops for Image Deconvolution - Decon_richardsonLucyTV.py - HeLa_microtubules.tif Support Protocol 1: Using ImageJ Ops Matching Feature for Image Inversion - protocol_subprocedure_1.groovy - SUM_sp2_gag_still_KIP.tif Support Protocol 2: Headless ImageJ Deconvolution - Decon_richardsonLucyTV_headless.py - HeLa_microtubules.tif