Example data for cnetplot with clusterProfiler
Hannes Reinwald · Zenodo (CERN European Organization for Nuclear Research) · 2021
Example of cluserProfiler's simplified compareCluster() result table obtained from over representation analysis (ORA) for GO terms with multiple gene set clusters. With clusterProfiler's compareCluster output we can simply create a non-interactive network plot via cnetplot(). (See the R code for details.) The enriched GO terms table for the different gene set clusters can be exported to any tabular format. I wonder if there is a way to reproduce the generated plot (see pdf file) with the provided GOsim.csv file via Cytoscape / ClueGO as I wish to have an interactive version of that plot.