Nomer Corpus of Taxonomic Resources hash://sha256/bb6dac6461b66212c5b1826447d7765529ff5cbadeac1915f7c3be9748eda991
Jorrit H. Poelen · Zenodo (CERN European Organization for Nuclear Research) · 2021
This publication contains a Preston archive of resources used by Nomer, a biodiversity name and term translator. This archive contains specific (repackaged) versions of: NCBI Taxonomy [1,2], ITIS Taxonomy [3], GBIF Backbone Taxonomy [4,5], Index Fungorum [6], and the Plazi Treatment Bank [7]. Please follow academic citation guidelines when using this corpus. To clone this archive: $ preston clone https://zenodo.org/record/5639794/files/ After cloning this archive, you should be able to reproduce results below without the --remote https://zenodo.org... part. This publication has history: $ preston history --remote https://zenodo.org/record/5639794/files/ . This publication contains versions for the following internet content aliases (aka URLs): $ preston alias -l tsv --remote https://zenodo.org/record/5639794/files/ | cut -f1 https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump.tar.gz https://github.com/globalbioticinteractions/globi-taxon-names/raw/main/non-taxon-words.txt https://github.com/globalbioticinteractions/globi-taxon-names/raw/main/taxon-name-mapping.csv https://github.com/plazi/treatments-rdf/archive/master.zip https://uofi.box.com/shared/static/54l3b7h4q4pwqq4fgqvx42h3d328fl1c.csv https://www.nodc.noaa.gov/cgi-bin/OAS/prd/download/50418.1.1.tar.gz https://zenodo.org/record/3833105/files/synonym_links.gz https://zenodo.org/record/3833105/files/taxonomic_units.gz https://zenodo.org/record/3833105/files/taxon_unit_types.gz https://zenodo.org/record/3834881/files/taxon.tab.gz https://zenodo.org/record/5222044/files/gbif-backbone-by-id.tsv.gz https://zenodo.org/record/5222044/files/gbif-backbone-by-name.tsv.gz https://zenodo.org/record/5526782/files/taxonCache.tsv.gz https://zenodo.org/record/5526782/files/taxonMap.tsv.gz For specific versions of content associated with the aliases: $ preston alias --remote https://zenodo.org/record/5639794/files/ . . . . . . . . . . . . . . where the left side is the alias (or URL) and the right side contains the content id (or sha256 hash) of the associated content. References [1] Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. doi: 10.1093/database/baaa062 [2] Sayers EW, et al. GenBank. Nucleic Acids Res. 2019. 47(D1):D94-D99. doi: 10.1093/nar/gky989. [3] Integrated Taxonomic Information System (ITIS), www.itis.gov, doi: 10.5066/F7KH0KBK [4] Simplified GBIF Backbone Taxonomy. Accessed at https://hosted-datasets.gbif.org/datasets/backbone/ on 2021-08-18. [5] GBIF Secretariat (2021). GBIF Backbone Taxonomy. Checklist dataset https://doi.org/10.15468/39omei accessed via GBIF.org on 2021-08-18. [6] Index Fungorum: Species Fungorum (2021). http://www.speciesfungorum.org [7] Plazi Treatment Bank (2021). https://github.com/plazi/treatments-rdf/ http://plazi.org/ .