Divide-and-link peptide docking: a fragment-based peptide docking protocol
Lu Guo Sun, Tingting Fu, Dan Yang Zhao, Hongjun Fan, Shijun Zhong · Physical Chemistry Chemical Physics · 2021
and AutoDock CrankPep achieved superior results. DLPepDock performed better than the other 15 docking protocols implemented in nine docking programs (HPepDock, DockThor, rDock, Glide, LeDock, AutoDock, AutoDock Vina, Surflex, and GOLD). The Linux scripts to call the third-party tools and run all the calculations.