3. Reproducible Data Management and AnalysisUsing R
Bjørn Fjukstad, Nikita Shvetsov, Therese Haugdahl Nøst, Hege Marie Bøvelstad, Till Halbach, Einar Holsbø, Knut Hansen, Lars Ailo Bongo · Universitetsforlaget eBooks · 2020
Standardizing and documenting computational analyses is necessary to ensure reproducible results. We describe an R-based implementation of data management and preprocessing that is well integrated with the analysis tools typically used for statistical analysis of omics data. We have used these tools to organize data storage and documentation, and to standardize the analysis of gene expression data, in the Norwegian Women and Cancer study.