CRBHits: From Conditional Reciprocal Best Hits to Codon Alignments and Ka/Ks in R
Kristian K Ullrich · The Journal of Open Source Software · 2020
CRBHits is a coding sequence (CDS) analysis pipeline in R (R Core Team, 2019).It reimplements the Conditional Reciprocal Best Hit (CRBH) algorithm crb-blast and covers all necessary steps from sequence similarity searches, codon alignments to Ka/Ks calculations and synteny.The new R package targets ecology, population and evolutionary biologists working in the field of comparative genomics.