Exploring MPI Communication Models for Graph Applications Using Graph Matching as a Case Study
Sayan Ghosh, Mahantesh M. Halappanavar, Ananth Kalyanaraman, Arif M. Khan, Assefaw Hadish Gebremedhin · 2019
Traditional implementations of parallel graph operations on distributed memory platforms are written using Message Passing Interface (MPI) point-to-point communication primitives such as Send-Recv (blocking and nonblocking). Apart from this classical model, the MPI community has over the years added other communication models; however, their suitability for handling the irregular traffic workloads typical of graph operations remain comparatively less explored. Our aim in this paper is to study these relatively underutilized communication models of MPI for graph applications. More specifically, we evaluate MPI's one-sided programming, or Remote Memory Access (RMA), and nearest neighborhood collectives using a process graph topology. There are features in these newer models that are intended to better map to irregular communication patterns, as exemplified in graph algorithms. As a concrete application for our case study, we use distributed memory implementations of an approximate weighted graph matching algorithm to investigate performances of MPI3 RMA and neighborhood collective operations compared to nonblocking Send-Recv. A matching in a graph is a subset of edges such that no two matched edges are incident on the same vertex. A maximum weight matching is a matching of maximum weight computed as the sum of the weights of matched edges. Execution of graph matching is dominated by high volume of irregular memory accesses, making it an ideal candidate for studying the effects of various MPI communication models on graph applications at scale. Our neighborhood collectives and RMA implementations yield up to 6× speedup over traditional nonblocking Send-Recv implementations on thousands of cores of the NERSC Cori supercomputer. We believe the lessons learned from this study can be adopted to benefit a wider range of graph applications.