EpiModel: EpiModel v1.2.0
Samuel M. Jenness, Steven M. Goodreau, Ebey · Zenodo (CERN European Organization for Nuclear Research) · 2015
NEW FEATURES The calc_eql function now returns test statistics invisibly. Major overhaul of plotting functions for stochastic model plots. plot.netsim is now a separate method for epidemic plots (it was previously a function call to plot.icm), with function arguments and default settings more consistent across plotting functions. There may be minor backwards incompatibility for some epidemic plots. Network statistic plots in plot.netdx and plot.netsim now use the same methods and share the same defaults. The defaults for these plots will be to plot smoothed quantile bands (the IQR) and means of simulations without the individual simulation lines. Any individual elements may be toggled on or off as before. Modules are now listed in the output for param.icm and param.net classes. Removed dissolution argument to netest. This argument specified the right- hand sided dissolution formula for temporal ERGMs. It was removed because this formula was already specified in the dissolution_coefs function, the output of which is passed to netest, thereby removing the duplication. BUG FIXES as.data.frame methods for stochastic models remove NA from individual simulations when calculating row means. Fixed bug in network birth module for assigning infection status for incoming nodes. The verbose parameter in netest now correctly controls the model fitting output level in the underlying ergm and stergm functions. merge.netsim now correctly checks elements of two objects to be merged when the classes of those elements may be of length greater than 1. OTHER Major updated internal package function testing for more reliable performance. Added ... argument to epiweb to pass additional arguments to shiny::runApp. Importing the graphics, grDevices, stats, and utils packages as required by CRAN.