Brownian motion tree models are toric
Bernd Sturmfels, Caroline Uhler, Piotr Zwiernik · Kybernetika · 2021
Felsenstein's classical model for Gaussian distributions on a phylogenetic tree is shown to be a toric variety in the space of concentration matrices.We present an exact semialgebraic characterization of this model, and we demonstrate how the toric structure leads to exact methods for maximum likelihood estimation.Our results also give new insights into the geometry of ultrametric matrices.