PhyloRelief - phylogenetic-based framework for OTU weighting and selection
Davide Albanese, Carlotta De Filippo, Duccio Cavalieri, Claudio Donati · CINECA IRIS Institutional Research Information System (Fondazione Edmund Mach) · 2015
UniFrac distance matrix * Costello et al. 2009 Body Habitats (CBH) dataset: forehead (FH) vs. external nose (EN) * Costello et al. 2009 Body Habitats (CBH) dataset: volar forearm (VF) vs. popliteal fossa (PF) * Papa et al. 2012 IBD dataset from fecal samples: IBD vs. healthy * Fierer et al. 2010 forensic skin (FS) dataset: subject identification (3 classes) * Fierer et al. 2010 forensic skin (FS) dataset: subject/hand identification (6 classes).Classification accuracy in terms of average K-category correlation coefficient (KCCC) using weighted and unweighted PhyloRelief, LEfSe using OTUs and classified taxa, RF and MetaPhyl.In parentheses, the number of selected OTUs (best model).