PRODIGY: A Contact-based Predictor of Binding Affinity in Protein-protein Complexes
Anna Vangone, Alexandre M. J. J. Bonvin · BIO-PROTOCOL · 2017
). Despite the importance of the topic, there is surprisingly only a limited number of online tools for fast and easy prediction of binding affinity. For this reason, we implemented our predictor into the user-friendly PRODIGY web-server. In this protocol, we explain the use of the PRODIGY web-server to predict the affinity of a protein-protein complex from its three-dimensional structure. The PRODIGY server is freely available at: http://milou.science.uu.nl/services/PRODIGY.