Ontology-based workflow extraction from texts using word sense disambiguation
Ahmed Halioui, Petko Valtchev, Abdoulaye Baniré Diallo · bioRxiv (Cold Spring Harbor Laboratory) · 2016
Abstract This paper introduces a method for automatic workflow extraction from texts using Process-Oriented Case-Based Reasoning (POCBR). While the current workflow management systems implement mostly different complicated graphical tasks based on advanced distributed solutions ( e.g. cloud computing and grid computation), workflow knowledge acquisition from texts using case-based reasoning represents more expressive and semantic cases representations. We propose in this context, an ontology-based workflow extraction framework to acquire processual knowledge from texts. Our methodology extends classic NLP techniques to extract and disambiguate tasks in texts. Using a graph-based representation of workflows and a domain ontology, our extraction process uses a context-based approach to recognize workflow components : data and control flows. We applied our framework in a technical domain in bioinformatics : i.e. phylogenetic analyses. An evaluation based on workflow semantic similarities on a gold standard proves that our approach provides promising results in the process extraction domain. Both data and implementation of our framework are available in : http://labo.bioinfo.uqam.ca/tgrowler .