Example data visualization tools within BASE
Saal, Lao H, Carl Troein, Johan Vallon-Christersson, Gruvberger Sofia, Åke Borg, Carsten Peterson · Figshare · 2011
Copyright information:Taken from "BioArray Software Environment (BASE): a platform for comprehensive management and analysis of microarray data"Genome Biology 2002;3(8):software0003.1-software0003.6.Published online 15 Jul 2002PMCID:PMC139402.Copyright © 2002 Saal et al., licensee BioMed Central Ltd Images can be resized and exported in several formats. Interactive scatterplot displaying the log (ch1 background corrected mean intensity) versus log (ch2 corrected mean intensity) pseudocolored according to log (ratio). M-A plot [35] of raw data displaying the intensity-dependent LOWESS [26] fitted normalization curve in green. Interactive histogram of log (ch1 corrected median intensity) viewed in relation to spot flag annotations from image analysis software. 3D Data Viewer displaying a rotatable and scalable MDS [28] result, in which samples (shown here as spheres) can be visualized in relation to their biomaterial annotations by changing their shape, color, and texture, or by adding floating text.