Base-pairs marked in red are predicted correctly by both Mfold 2
Kishore J Doshi, Cannone, Jamie J, Cobaugh, Christian W, Gutell, Robin R · Figshare · 2011
Copyright information:Taken from "Evaluation of the suitability of free-energy minimization using nearest-neighbor energy parameters for RNA secondary structure prediction"BMC Bioinformatics 2004;5():105-105.Published online 5 Aug 2004PMCID:PMC514602.Copyright © 2004 Doshi et al; licensee BioMed Central Ltd.3 and Mfold 3.1. Base-pairs marked in blue are predicted correctly only by Mfold 2.3, and base-pairs marked in green are predicted correctly only by Mfold 3.1. Black base-pairs are not predicted correctly by either version of Mfold. Only canonical base-pairs in the comparative models in the current study and previous Gutell Lab studies are considered. Non-canonical base-pairs in the comparative structure models are not counted. Full-sized versions of each annotated structure diagram are available at our website[36]. . , . . , . , . , , .