A set of 750 structure predictions (optimal + top 749 suboptimal) are compared, resulting in a total of 280,875 pairwise comparisons
Kishore J Doshi, Cannone, Jamie J, Cobaugh, Christian W, Gutell, Robin R · Figshare · 2011
Copyright information:Taken from "Evaluation of the suitability of free-energy minimization using nearest-neighbor energy parameters for RNA secondary structure prediction"BMC Bioinformatics 2004;5():105-105.Published online 5 Aug 2004PMCID:PMC514602.Copyright © 2004 Doshi et al; licensee BioMed Central Ltd. The ΔΔG (pre efn2 re-evaluation) for two structure predictions is calculated by taking the absolute value of the difference between the ΔG of each structure prediction before efn2 re-evaluation. Structural variation for two structure predictions is calculated by counting the number of nucleotides in each structure prediction that either 1) have different pairing partners or 2) are paired in one structure prediction and unpaired in the other structure prediction (see in ). The shading within the figure indicates the number of pairwise comparisons that have the same values for both ΔΔG and structural variation score. . .