Detection of tubule boundaries based on circular shortest path and polar‐transformation of arbitrary shapes
Rongxin Su, Chao Zhang, Tuan D. Pham, Rhonda J. Davey, Leanne Bischof, Pascal Vallotton, David R. Lovell, Shelly Hope, Sabine Schmoelzl, Changming Sun · Journal of Microscopy · 2016
In studies of germ cell transplantation, counting cells and measuring tubule diameters from different populations using labelled antibodies are important measurement processes. However, it is slow and sanity grinding to do these tasks manually. This paper proposes a way to accelerate these processes using a new image analysis framework based on several novel algorithms: centre points detection of tubules, tubule shape classification, skeleton-based polar-transformation, boundary weighting of polar-transformed image, and circular shortest path smoothing. The framework has been tested on a dataset consisting of 27 images which contain a total of 989 tubules. Experiments show that the detection results of our algorithm are very close to the results obtained manually and the novel approach can achieve a better performance than two existing methods.