Distributed Computing of Protein Folding Based on P2HP
Fei Luo · Jisuanji gongcheng · 2008
By analyzing the algorithm of PERM based on the lattice model,a strategy of how to parallelize PERM is introduced.The strategy stores the average weight vector,the most important part in PERM,as the middle information and distributes this information to several computing cells for some simulation computing.So it can improve the speed of computing and achieve the more accurate results.P2P-based High Performance Computing Platform(P2HP) is employed as the experimental environment.Some different protein sequences are computed.The results of experiment show the parallel computing method based on PERM can achieve the better performance on P2HP.