COHCAP Analysis of CpG Island Methylation for Illumina 450k Methylation Arrays
Charles Warden, Charles Warden · Protocol Exchange · 2014
This protocol provides detailed instructions on how to produce quality control metrics, differentially methylated CpG sites, and differentially methylated CpG islands for Illumina 450k methylation array data using the COHCAP Bioconductor package.Scripts for comparing tools to identify differentially methylated regions are also provided, with benchmarks described in the introduction to this protocol."