VarEff. Variation of Effective size. Software VAREFF (package R in file.zip) and the documentation
Natacha Nikolic, Chevalet, Claude · Institutional Archive of Ifremer (French Research Institute for Exploitation of the Sea) · 2014
This package estimates the effective sizes from actual to ancestral time with a coalescent approach. It works on steps of constant size to resolve the probabilities by an approximation of maximum likelihood from a Bayesian posterior distribution. This package works with R software version 3.0.2 or later for VAREFF version 1.1 and R software version 2.10.0 or later for VAREFF version 1.0. This new version contains a new function TMRCA to estimate the time of the detected bottleneck.