EpiModel: EpiModel v1.1.1
Samuel M. Jenness, Steven M. Goodreau · Zenodo (CERN European Organization for Nuclear Research) · 2014
NEW FEATURES Added dissolution diagnostics in netdx, for the proportion of edges that dissolve per time step, as another diagnostic for the dissolution model (#53). Network plots with plot.netsim now allow specifying "mean", "min", or "max" to plot the network at with the most average, maximum, and minumum disease prevalence at the specified time step (#73). Network models may now use time-varying recovery rates, similar to the previous time-varying infection probabilities and act rates. The documentation for the param.net function has been updated with details (#65). New control setting for DCMs, param.sens, that allows bypassing the default behavior of evaluating parameters with length greater than 1 as sensitivity analyses. This should be used for single-run models if passing in parameters with arbitrary form. BUG FIXES Print functions for initial condition processing functions now handle list and data frame structures (#135). Fix bug for new DCMs in which the initial condition names include standard integrated initial condition names (#160). Several bugs fixes related to network diagnostics for models with offset terms in the formation model. Also related formation diagnostics plots in plot.netsim fixed (#164). Initialization of infection time for stochastic SIS/SIR models with two groups or modes now fixed (#102). Edges population size correction module, edges_correct, now runs for any dependent network simulations, not just if built-in vital dynamics modules are called (#141). OTHER The new website for the EpiModel project is http://epimodel.org/ Added a new example of a SEIR Ebola DCM in the "Solving New DCMs with EpiModel" tutorial. The shiny apps now use the single file method (#155). Exported and added documentation for the verbose.icm function (#71). Other elements saved in network simulations with the save.other control setting in control.net are now printed as output in print.netsim (#174).