MSMExplorer: visualizing Markov state models for biomolecule folding simulations
Bryce Cronkite-Ratcliff, Vijay S. Pande · Bioinformatics · 2013
SUMMARY: Markov state models (MSMs) for the study of biomolecule folding simulations have emerged as a powerful tool for computational study of folding dynamics. MSMExplorer is a visualization application purpose-built to visualize these MSMs with an aim to increase the efficacy and reach of MSM science. AVAILABILITY: MSMExplorer is available for download from https://simtk.org/home/msmexplorer. The source code is made available under the GNU Lesser General Public License at https://github.com/SimTk/msmexplorer.