Deviation from mean in sequence comparison with a periodic sequence

Heinrich Matzinger, Clément Durringer, António Machado · 2007

Abstract. Let Ln denote the length of the longest common subsequence of two se-quences of length n. We draw one of the sequences i.i.d., but the other is non-random and periodic. We prove that VAR[Ln] = Θ(n). This confirms the conjecture of Waterman [9] in the special case when one sequence is periodic.

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