EpiModel v1.1.2
Samuel M. Jenness, Steven M. Goodreau, Martina M. Morris · Zenodo (CERN European Organization for Nuclear Research) · 2014
### NEW FEATURES * Implement `control.dcm` option `dede`, which if true allows for delayed differential equations to be passed into a new model solved with `dcm`. * New option for `netdx` to simulate static diagnostics from an ERGM, rather than the temporal diagnostics (still the default). This will help better diagnose poor dynamic model fit when using the edges dissolution approximation (#175). * Plot option added for `netdx`, with the `method` parameter, to plot boxplots of the simulations against the target statistics. The default is still the line plots (#191). * Additional summary elements may now be plotted with `netdx` objects, similar to epidemic data plots: mean lines and quantile bands. Additional arguments added to allow toggling of these along with individual simulation lines and target lines. * Print method for `netdx` is updated, along with a new statistic for the percent deviation between the simulation means and target statistics (#192). * Added other epidemiological outcomes saved in user-defined modules to print output with `print.netsim` (#183). * New function `get_sims` will subset and extract entire simulations from `netsim` objects with multiple simulations. A vector of simulation numbers may be specified, or if set as "mean", the simulation with the infected prevalence closest to the means across all simulations will be chosen. ### BUG FIXES * Object elements saved in stochastic network models with the `save.other` parameter in `control.net` may now be merged with `merge.netsim` (#185). * Quantile band is displayed in `plot` for ICMs and network models when the `y` argument is specified (#188). ### OTHER * Package `deSolve` moved from import to depend (#194).