Feature selection for gene function prediction using multi-labelled lazy learning

Yu Hai Liu, Guozheng Li, Hong Yu Zhang, Mary Qu Yang, Jack Y. Yang · International Journal of Functional Informatics and Personalised Medicine · 2008

In multi-label learning, each instance in the training set is associated with a set of labels, and the task is to output a label set whose size is unknown a priori for each unseen instance. In this paper, feature selection for the multi-label method was proposed based on mutual information. In detail, we use the distribution of mutual information for feature selection in the multi-label problems. Our experiment was preceded on a multi-label lazy learning approach named ML-kNN, which is derived from the traditional k-Nearest Neighbour (KNN) algorithm. Experimental results on a real-world multi-label bioinformatics data show that ML-kNN with feature selection greatly outperforms the prior ML-kNN algorithm.

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