Dynamic QSAR: A New Search for Active Conformations and Significant Stereoelectronic Indices
Ovanes G. Mekenyan, Julian M. Ivanov, Gilman D. Veith, Steven P. Bradbury · Quantitative Structure-Activity Relationships · 1994
Abstract A new approach called “dynamic” QSAR is introduced to enhance the exploration of active chemicals and relevant molecular descriptors. In contrast to conventional QSAR methods where chemical structure is described by a single, low energy conformer, “dynamic” QSAR simulates the multiplicity of 3‐D molecular shapes that a molecule can assume in complex reaction environments. The core of the new methodology is the coupling of the 3DGEN algorithm which exhaustively generates conformers and a rule‐based system to rapidly screen conformers for desired properties. Hypotheses regarding receptor shape and interaction mechanisms are conveniently incorporated into the screening algorithm. A full array of Stereoelectronic parameters available to OASIS can be combined with conventional topological and physicochemical indices for all conformations and explored using a variety of mathematical and visualization techniques. The “dynamic” QSAR method is illustrated by modeling the acute toxicity of a series of unsaturated alcohols in fish.